Jack Brinkman, Mr Goran Sterjov1, Keeva Connolly, Christopher Mangion, Winnie Mok, Caitlin Ramsay, Sarah Richmond, Nigel Ward, Kathryn Hall
1Csiro, Australia, 2Atlas of Living, Melbourne, 3Atlas of Living, Canberra, 3Australian BioCommons, 4Atlas of Australia, Brisbane, 5Bioplatforms Australia, 6Australian BioCommons, Brisbane,
Biography:
Goran is a programmer.
Abstract:
Making software reproducible is hard. Making an entire Atlas reproducible makes it even harder. At the Australian Reference Genome Atlas we’ve wrestled with tools and technologies to do just that. From making our code run within a Nix environment, writing declarative schema migrations, importing data relying on eventual consistency, and using declarative infrastructure configurations on Kubernetes, we will detail tips and tricks as well as some significant and unexpected gains as a result of being a reproducible Atlas that can run on your laptop.
Australian Reference Genome Atlas (ARGA) is an NCRIS-enabled platform, powered by Atlas of Living Australia (ALA), in collaboration with Bioplatforms Australia and Australian BioCommons, with Australian Research Data Commons (ARDC).